Our approach to software development has been to build tools that we and our collaborators need in our bioinformatic workflows. We hope that some of these tools are useful to others and are always looking for feedback and suggestions for improvement!
Visualization of genomic annotations across the tree of life
Statistical detection of co-occurring genes across phylogenetic treesDiffBase
A bioinformatic database and phylogenetic classification of C. difficile toxinsPathFams
A database of pathogen-associated protein domains, and additional statistics on PFAM families.AXIOME3 (Neufeld Lab)
Automated QIIME 2 Workflow wrapped in Luigi FrameworkMetAnnotate
Function-specific taxonomic profiling of metagenomes.