Lab Software & Data

MetAnnotate

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Taxonomic profiling of metagenomes using custom protein families.







ORFan DB

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Predicted ORFans their functions from human gut, marine, and soil metagenomes.







mimicMe

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A tool for prediction and analysis of host-pathogen mimicry.







cbsPredict

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Given a protein structure (PDB file), cbsPredict will identify potential carbohydrate-binding sites based on detection of coplanar, aromatic residues located on the protein surface.







AFPredictor

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Given a protein structure (PDB file), this tool will predict potential ice-binding sites based on geometric analysis of the protein surface. It can be used to predict novel antifreeze proteins from 3D structure alone.









Complex

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A resource of predicted human transcription factor complexes and their binding motifs. (Bejerano Lab)