Lab Software & Data
Taxonomic profiling of metagenomes using custom protein families.
Predicted ORFans their functions from human gut, marine, and soil metagenomes.
A tool for prediction and analysis of host-pathogen mimicry.
Given a protein structure (PDB file), cbsPredict will identify potential carbohydrate-binding sites based on detection of coplanar, aromatic residues located on the protein surface.
Given a protein structure (PDB file), this tool will predict potential ice-binding sites based on geometric analysis of the protein surface. It can be used to predict novel antifreeze proteins from 3D structure alone.
A resource of predicted human transcription factor complexes and their binding motifs. (Bejerano Lab)